Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MTVVVEKTPTTLPQATPNGAAPWH------VRAGAFAIDVLPGLAVAATMALTALTVPPGSAWRWLCACLLGLTILLLAVNRLLLPTITGWSLGRALTGI--RVVRRDGSAIGPWRL-LVRDLAHLVDTL-SLFVGWLWPLWDSRRRTFADLLLR-------TEVRRVEPVQRPAVIRRLTAAV-----------ALAAAGACASATAVGAAVVYVNEWQTDHTRAQLATRGPKLVVDVLSYDPETVQRDFERARSLATDRYRPQLSIQQDSVRESGPVRNQYWVTDSAVLSATPAQATMLLFMQGERGTP-----------PNQRYI----QSTVRAIFQKSRGQWRL-DDLAVVMKPRQPTGEK-------------------------------------------- |
| 4X4W Chain:A ((1-409)) | MFTMKLQSPEFQSLFTEGLKSLTELFVKENHELRIAGGAVRDLLNGVKPQDIDFAT--TATPTQMKEMFQSAGI----------RMINGTITARLHEENFEITTLRIDVTTDGAEVEFTTDWQKDAERRDLTINSMFLGFDGTLFDYFN-GYEDLKNKKVRFVGHAKQRIQEDYLRILRYFRFYGRIVDKPGDHDPETLEAIAENAKGLAGISGERIWVELKKILVGNHVNHLIHLIYDLDVAPYIGLPANASLEEFDKVSKNV--DGFSPKPVTLLASLFKVQDDVTKLDLRLKIAKEEKNLGLFIVKNRKDLIKATDSSDPLKPYQDFIIDSDATTRVCELLKYQGEHCLLKEMQQWSIPPFPVSGHDIRKVGISSGKEIGALLQQLREQWKKSGYQMEKDELLSYIKKTL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4X4W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -52383 for 2255 contacts (-23.2/contact) +
2D Compatibility (PS) -32356 + (NN) -5566 + (LL) 1656
1D Compatibility (HY) -1600 + (ID) 2500
Total energy: -92749.0 ( -41.13 by residue)
QMean score : 0.082
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