Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSESDAANTEPEVLVEQRDRILIITINRPKAKNAVNAAVSRGLADAMDQLDGDAGLSVAILTGGGG-SFCAGMDLKAFARGENVVV----EGRGLGFTERPPTKPLIAAVEGYALAGGTELALAADLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLPAERAHELGLVNVLAEPGTALDAAIALAEKITANGPLAVVATKRIITESR---------GWSPDTMFAEQMKILVPVFTSNDAKEGAIAFAERRRPRWTGT
3R9T Chain:C ((9-264))
-----------PGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLSVQASKRIAYGVDDGVVVGDEPGWD------RTMREMRALLKSEDAKEGPR--AEKREPVW---
General information:
TITO was launched using:
RESULT:
Template:
3R9T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131674 for 2071 contacts (-63.6/contact) +
2D Compatibility (PS) -26787 + (NN) -14247 + (LL) 1044
1D Compatibility (HY) -17200 + (ID) 6100
Total energy: -194964.0 ( -94.14 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_3R9T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R9T-query.scw
PDB file :
Tito_Scwrl_3R9T.pdb
: