Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAVRRIRAAALPD-LPDASWSNALLVGEELVMSGMTAHPATRQAAERGAALDAHAQALVVLGKVKALLEAAGGHVGNLYKLNVYVTRIA-DKDAIGRARQEFFAGQGTFPASTLVEVSGLVFPELLVEIDAWARLDIDLANCDEA
1PF5 Chain:A ((2-130))
-VERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGTP-----EPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPENQFEDIMTVKNEIFSAP-PYPNWTAVGVTWLA--GFDFEIKVIARIPE--------
General information:
TITO was launched using:
RESULT:
Template:
1PF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78517 for 900 contacts (-87.2/contact) +
2D Compatibility (PS) -13802 + (NN) -5886 + (LL) 740
1D Compatibility (HY) -4800 + (ID) 1350
Total energy: -103615.0 ( -115.13 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1PF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PF5-query.scw
PDB file :
Tito_Scwrl_1PF5.pdb
: