Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQMPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTPVNRNV
3N84 Chain:D ((3-103))
-----------------------------------------------------EMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQV---------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3N84.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63065 for 665 contacts (-94.8/contact) +
2D Compatibility (PS) -10887 + (NN) -6813 + (LL) 5496
1D Compatibility (HY) -14000 + (ID) 5000
Total energy: -94269.0 ( -141.76 by residue)
QMean score : 0.289
(partial model without unconserved sides chains):
PDB file :
Tito_3N84.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N84-query.scw
PDB file :
Tito_Scwrl_3N84.pdb
: