Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIKCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCWPYFKTYSYECSQGTLTCKGDNNACAASVCDCDRLAAICFAGAPYNDNNYNIDLKARCQ
1XXW Chain:B ((1-119))
NRWQFKNMISCTVPSRSWWDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAEKISGCNPRFRTYSYECTAGTLTCTGRNNACAASVCDCDRLAAICFAGAPYNDNNYNIDLQARCN
General information:
TITO was launched using:
RESULT:
Template:
1XXW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66173 for 884 contacts (-74.9/contact) +
2D Compatibility (PS) -13085 + (NN) -8630 + (LL) 0
1D Compatibility (HY) -15200 + (ID) 5350
Total energy: -108438.0 ( -122.67 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_1XXW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XXW-query.scw
PDB file :
Tito_Scwrl_1XXW.pdb
: