Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
1GRN Chain:A ((1-136))
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
General information:
TITO was launched using:
RESULT:
Template:
1GRN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63291 for 972 contacts (-65.1/contact) +
2D Compatibility (PS) -14244 + (NN) -5613 + (LL) 0
1D Compatibility (HY) -20800 + (ID) 6800
Total energy: -110748.0 ( -113.94 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_1GRN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GRN-query.scw
PDB file :
Tito_Scwrl_1GRN.pdb
: