Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLMVVLSLIAAAWAEEQNKLVHGGPCDKTSHPYQAALYTSG-HLLCGGVLIHPLWVLTAAHCK--KPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADG--DFPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK
1FXY Chain:A ((1-227))
---------------------IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQLQGVVSWG-DGCAQKNKPGVYTKVYNYVKWIKNTIAAN
General information:
TITO was launched using:
RESULT:
Template:
1FXY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -148193 for 1881 contacts (-78.8/contact) +
2D Compatibility (PS) -23933 + (NN) -10402 + (LL) 2596
1D Compatibility (HY) -17600 + (ID) 4650
Total energy: -202182.0 ( -107.49 by residue)
QMean score : 0.680
(partial model without unconserved sides chains):
PDB file :
Tito_1FXY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FXY-query.scw
PDB file :
Tito_Scwrl_1FXY.pdb
: