Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
4M6L Chain:A ((2-186))
VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN----
General information:
TITO was launched using:
RESULT:
Template:
4M6L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115513 for 1394 contacts (-82.9/contact) +
2D Compatibility (PS) -20139 + (NN) -10743 + (LL) 632
1D Compatibility (HY) -24000 + (ID) 6950
Total energy: -176713.0 ( -126.77 by residue)
QMean score : 0.830
(partial model without unconserved sides chains):
PDB file :
Tito_4M6L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M6L-query.scw
PDB file :
Tito_Scwrl_4M6L.pdb
: