Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMYSKLLTLTTLLLPTALALPSLVERACDYTCGSNCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
5RNT Chain:A ((1-104))
--------------------------ACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT
General information:
TITO was launched using:
RESULT:
Template:
5RNT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40484 for 776 contacts (-52.2/contact) +
2D Compatibility (PS) -11709 + (NN) -7770 + (LL) 2712
1D Compatibility (HY) -12400 + (ID) 5150
Total energy: -74801.0 ( -96.39 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_5RNT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5RNT-query.scw
PDB file :
Tito_Scwrl_5RNT.pdb
: