Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDAVSSDRNFPNSTNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRTT
3CM2 Chain:E ((28-129))
--------------TNLPRNPSMADYEARIFTFGTWIYSVNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVRT-
General information:
TITO was launched using:
RESULT:
Template:
3CM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23799 for 705 contacts (-33.8/contact) +
2D Compatibility (PS) -11147 + (NN) -6784 + (LL) 264
1D Compatibility (HY) -14000 + (ID) 5100
Total energy: -60566.0 ( -85.91 by residue)
QMean score : 0.455
(partial model without unconserved sides chains):
PDB file :
Tito_3CM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CM2-query.scw
PDB file :
Tito_Scwrl_3CM2.pdb
: