Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAATGATLLLERCQPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLVAAAEDCIKALDLNAVRGLIVSGDAFINGSVALAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNLARG
1Y6Q Chain:B ((11-242))
MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG
General information:
TITO was launched using:
RESULT:
Template:
1Y6Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175734 for 2069 contacts (-84.9/contact) +
2D Compatibility (PS) -25275 + (NN) -17141 + (LL) 0
1D Compatibility (HY) -32000 + (ID) 10500
Total energy: -260650.0 ( -125.98 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_1Y6Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y6Q-query.scw
PDB file :
Tito_Scwrl_1Y6Q.pdb
: