Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFSTMKMAHAPPGHHSVIGRPSVNGLAYAEYVIYRGEQAYPEYLITYQIMKPEAPS
4N4T Chain:B ((9-211))
APEDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNVIRIQKVVNKKLRERFCHRQKEVSEENHNHHNERMLFHGSPFINAIIHKGFDERHAYI---FGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYICHRQMLFCRVTLGKSFLQFS--KMAHAPPGHHSVIG--------YAEYVIYRGEQAYPEYLITYQIMKPE---
General information:
TITO was launched using:
RESULT:
Template:
4N4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66732 for 1468 contacts (-45.5/contact) +
2D Compatibility (PS) -20821 + (NN) -9101 + (LL) 292
1D Compatibility (HY) -25200 + (ID) 9500
Total energy: -131062.0 ( -89.28 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_4N4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4N4T-query.scw
PDB file :
Tito_Scwrl_4N4T.pdb
: