Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAA----GEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLGKQASAEEDSFADGLLDCPHYTRPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLE--GLA--LTDEQRKLLKEAQAEHNS
4H3Z Chain:A ((22-274))
MQFDIVTLFPDMFRALTDWGITSRAAKQERYGLRTWNPRDFTTDNYRTIDDRPYGGGPGMVMLARPLEDAINAAKAAQAEQGIGGARVVMMSPQGATLNHDKVMRFAAEPGLILLCGRYEAIDQRLIDRVVDEEVSLGDFVLSGGELPAMALIDAVVRHLPGVLN------QDSFVDGLLDCPHYTRPEEYDGVRVPDVLLGGHHAEIEQWRRREALRNTWLKRPDLIVQARKNKLLSRADEAWLASLAKDAS-
General information:
TITO was launched using:
RESULT:
Template:
4H3Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150687 for 1703 contacts (-88.5/contact) +
2D Compatibility (PS) -26529 + (NN) -14790 + (LL) 520
1D Compatibility (HY) -25600 + (ID) 6400
Total energy: -223486.0 ( -131.23 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_4H3Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3Z-query.scw
PDB file :
Tito_Scwrl_4H3Z.pdb
: