Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDPTVPVFGTKLTPINGREETPCYNQTLSFTVLTCIISLVGLTGNAVVLWLLGY-RMRRNAVSIYILNLAAADFLFLSFQIIRLPLRLINISHL-----IRKILVSVMTFPYFTGLSMLSAISTERCLSVLWPIWYRCRRPTHLSAVVCVLLWGLSLLFSMLEWRF-CDFLFSGA-----DSSWCET-------SDFIPVAWLIFLCVVLCVSSLVLLVRILCGSR-----------------------------------------------------------------------------------------------------------------------------------------------------------------KMPLTRLYVTILLTVLVFLLCGLPFGILGALIYRMHLNLEVLYCHVYLVCMSLSSLNSSANPIIYFFVGSFRQRQNRQNLKLVLQRALQDKPEVDKGEGQLPEESLELSGSRLGP |
2RH1 Chain:A ((40-477)) | --------------------------VVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILM-KMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN---LIRKEVYILLNWIGYVNSGFNPLIYC-RSPDF--R--IAFQELLCL----------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2RH1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -231839 for 1918 contacts (-120.9/contact) +
2D Compatibility (PS) -26090 + (NN) -8780 + (LL) 2448
1D Compatibility (HY) -16000 + (ID) 2050
Total energy: -282311.0 ( -147.19 by residue)
QMean score : 0.246
|
|
|