Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVVPPSRCNPTLLTPCAGPALFGGPVPPACCAQLRAQAACLCAYARSP-NYGSY--------IRSPNARRLFAVCGLPMPQCS-----------------------
1U78 Chain:A ((2-104))
--PRGSALSDTERAQ-LDVMKLLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKRSG
General information:
TITO was launched using:
RESULT:
Template:
1U78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31500 for 375 contacts (-84.0/contact) +
2D Compatibility (PS) -7346 + (NN) -3472 + (LL) 392
1D Compatibility (HY) 0 + (ID) 400
Total energy: -42326.0 ( -112.87 by residue)
QMean score : 0.293
(partial model without unconserved sides chains):
PDB file :
Tito_1U78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U78-query.scw
PDB file :
Tito_Scwrl_1U78.pdb
: