Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPPLGTCGAQLS---QLAPCARYSVPPLP---GQALP-------TPGPECCSALGSVSRDCACGAIDI----------------------INSLPAKCGLPR-VSCQ
1SM7 Chain:A ((2-104))
---PQKCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIGTC-
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49771 for 432 contacts (-115.2/contact) +
2D Compatibility (PS) -6688 + (NN) -1054 + (LL) -40
1D Compatibility (HY) -3600 + (ID) 650
Total energy: -61803.0 ( -143.06 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: