Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPPGGCVPQLNRLLACRAYLVPG---AADP---SADCCSALSSISRDCACSTMG-----------------------IINSIPSRCNIGRVNCSA
1HSS Chain:A ((15-103))
----------PALPACRPLLRLQCNGSQVPEAVLRDCCQQLAHISEWCRCGALYSMLDSMYKEHGAFPRCRREVVKLTAASITAVCRLPI-----
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40268 for 314 contacts (-128.2/contact) +
2D Compatibility (PS) -5216 + (NN) -2476 + (LL) 184
1D Compatibility (HY) -4000 + (ID) 850
Total energy: -52626.0 ( -167.60 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: