Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IPVCNIDTNDLAKCRPAVT----GN-NPPP-------PGPDCCAVARVANLQCLCPYKP-YLPT-------V-G----IDPSRVRPLLANCGVNSPSCF
2LVF Chain:A ((16-105))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLSPMRC-
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17670 for 365 contacts (-48.4/contact) +
2D Compatibility (PS) -6825 + (NN) -615 + (LL) 544
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -26666.0 ( -73.06 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: