Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGRMPINQAAASLSPCLPATKN----PRG---------KVPPVCCAKVGALIRTNPRCLCAVMLSPLAK------KA-G----INPGIAIGVPKRCNIRNRPAGKRCGRYIVP
2LVF Chain:A ((16-101))
-------------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM---DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25199 for 342 contacts (-73.7/contact) +
2D Compatibility (PS) -5989 + (NN) 3104 + (LL) 1364
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -29770.0 ( -87.05 by residue)
QMean score : 0.072
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: