Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGRNPPDREAI--KLAPCAMAAQDTSA---------------------KVSAICCARVKQMGQNPKCLCAVMLSSTAR---S-------SGAKPEISMTIPKRCNIANRPVGYKCGAYTLP
1PSY Chain:A ((16-116))
------QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV---------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19192 for 480 contacts (-40.0/contact) +
2D Compatibility (PS) -7213 + (NN) -5189 + (LL) 416
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -33078.0 ( -68.91 by residue)
QMean score : 0.276
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: