Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVQSALVPCLSYLKTT--GP-------------------TPPATCCNGVRTINNAAKTTADRRTACQCLKSAAGSVK---GL-------NPTTVAGLPGKCGVNIPYKISLSTNCATVK
1PSY Chain:A ((25-123))
-------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQTR-------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31881 for 505 contacts (-63.1/contact) +
2D Compatibility (PS) -6665 + (NN) -524 + (LL) 1616
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -41404.0 ( -81.99 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: