Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ITCGQVTSSLAPCIGYVRS---GGAV-----------PPACCNGIRTINGLARTTADRQTACNCLKNLAGS-I--S-GV-------NPNNAAGLPGKCGVNVPYKISTSTNCATVK
2LVF Chain:A ((16-101))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24711 for 338 contacts (-73.1/contact) +
2D Compatibility (PS) -6004 + (NN) 2240 + (LL) 1808
1D Compatibility (HY) -4400 + (ID) 600
Total energy: -31667.0 ( -93.69 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: