Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AITCGQVSSALSPCIPYARGNG---A------------NPSAACCSGVRRIAGAVQSTADKKTACNC--IKRAAGGLN-------------AGKAADIPSKCSVSIPYAINPSVDCSTIR
1SM7 Chain:A ((14-101))
---------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE--------DQV--CVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI-------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30112 for 389 contacts (-77.4/contact) +
2D Compatibility (PS) -6032 + (NN) -959 + (LL) 2024
1D Compatibility (HY) -4000 + (ID) 700
Total energy: -39779.0 ( -102.26 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: