Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------VTCDPVELSACANAIT-SSSPP-----SAICCSKLKQQRPCLCQYVKN-PN--LQKLVNSPNAKKVATICGSP-FPNC-----------------------------
1F9M Chain:A ((10-121))
MEAIVGKVTEVNKDTFW---PIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
General information:
TITO was launched using:
RESULT:
Template:
1F9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8685 for 338 contacts (-25.7/contact) +
2D Compatibility (PS) -7000 + (NN) -3762 + (LL) 344
1D Compatibility (HY) -2400 + (ID) 500
Total energy: -22003.0 ( -65.10 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_1F9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9M-query.scw
PDB file :
Tito_Scwrl_1F9M.pdb
: