Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------VTCQVTQLAPCASAIS-SSSPP-----SSQCCAKIKEQKPCLCQYMKN-PS--LKAYVSSPNAKKVANACGVP-IPKC-----------------------------
1F9M Chain:A ((10-121))
MEAIVGKVTEVNKDTF---WPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS
General information:
TITO was launched using:
RESULT:
Template:
1F9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11197 for 338 contacts (-33.1/contact) +
2D Compatibility (PS) -7158 + (NN) -3631 + (LL) 60
1D Compatibility (HY) -3600 + (ID) 450
Total energy: -25976.0 ( -76.85 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1F9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F9M-query.scw
PDB file :
Tito_Scwrl_1F9M.pdb
: