Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NGPCSNTLSSLSACMPAIE----GEN-PQS-------PSVACCDVVRGSDASCLCSIVTTYANL-------TDA--MGINLRAALLLPKQCKRAVPSGFTCGEID
2LVF Chain:A ((16-106))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-P--MRCP---
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29389 for 403 contacts (-72.9/contact) +
2D Compatibility (PS) -7589 + (NN) -4218 + (LL) 8
1D Compatibility (HY) -3600 + (ID) 850
Total energy: -45638.0 ( -113.25 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: