Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QSICNVSISGLTSCSPAVT----PPN-PAPP-----------TSACCSALSHA--DLRCLCSYKNSTL------LPSLGI---DQKLPLKLPEKCRLPHRAPC
1W2Q Chain:A ((23-112))
--------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFR-----
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18276 for 354 contacts (-51.6/contact) +
2D Compatibility (PS) -6494 + (NN) -2692 + (LL) 844
1D Compatibility (HY) -4800 + (ID) 550
Total energy: -31968.0 ( -90.31 by residue)
QMean score : 0.312
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: