Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ADDDAVLLCNMTRGGLEACKPSVRS-----GSSDP----AADPSKECCAALAGADLPCLCSYRHSFLLP------SL-G----IDPDLALQLPAKCNLTATPGC
2LVF Chain:A ((16-105))
-------------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGMDESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS-PMRC
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20271 for 408 contacts (-49.7/contact) +
2D Compatibility (PS) -7713 + (NN) -3663 + (LL) 1084
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -34713.0 ( -85.08 by residue)
QMean score : 0.433
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: