Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKTPIRSAAASLSPCLSAAGNVRA---------------AVPPTCCSKVGSLIKTAPKCLCAVLLSPL--A--KQ-AG-----IKPGIAITIPKRCNIGNRPAGKKCGSK
1SM7 Chain:A ((14-100))
--------------HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ----------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57788 for 402 contacts (-143.8/contact) +
2D Compatibility (PS) -5913 + (NN) 1871 + (LL) 944
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -63986.0 ( -159.17 by residue)
QMean score : 0.226
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: