Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGKTPIRSAAASLSPCLGAAGNA------RA---AVPPACCSKVTALIKTAPKCLCAVLLS---PLAKQ-----------A-G----I-K-PGIAITIPKRCSIKNRQAGKKCGKYTLP
1B1U Chain:A ((16-110))
--------------PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI---PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIHG----------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42566 for 396 contacts (-107.5/contact) +
2D Compatibility (PS) -6317 + (NN) 133 + (LL) 1048
1D Compatibility (HY) -3600 + (ID) 500
Total energy: -51802.0 ( -130.81 by residue)
QMean score : 0.410
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: