Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGKCGKTPAEKVALKLAPCAKAAQDP------GAR---PPAACCAAVRDIGTHQSHACLCAVLLSSTV---RR-----------S-G----V-K-PEVAITIPKRCKLANRPVGYKCGGLMTTYDGLV
1B1U Chain:A ((16-110))
--------------PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI----PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIHG---------------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35386 for 412 contacts (-85.9/contact) +
2D Compatibility (PS) -6747 + (NN) -1439 + (LL) 1160
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -45462.0 ( -110.34 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: