Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DMSPSQCKEEQRLLVNACRAVIFG-RSPSPSCCERVRVTHV----------ECVCPVITPQLAALIGVERTIKQIEGCGRTVP----HNFKCGSITTP
1SIY Chain:A ((3-90))
------CGQVQGNL-AQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSI---
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32717 for 507 contacts (-64.5/contact) +
2D Compatibility (PS) -7235 + (NN) 2609 + (LL) 212
1D Compatibility (HY) -800 + (ID) 900
Total energy: -38831.0 ( -76.59 by residue)
QMean score : 0.235
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: