Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QAPAPEPTAEAPGPDCFTNLL---SLSDCLTYVEAGSNL----T---------KPEKPCCPELAGLVESTPQCLCYLLDKNATSS-----YG-F--NIDMNRALNLPTVCKVSTPPVSLCSG
1SM7 Chain:A ((4-105))
--------------KCQREFQQEQHLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQE---DQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQ--IGTCP-
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44845 for 549 contacts (-81.7/contact) +
2D Compatibility (PS) -8007 + (NN) -53 + (LL) -100
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -58055.0 ( -105.75 by residue)
QMean score : 0.228
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: