Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTCPEVSKALVPCVTYLA----TGS-SF----------VHCCTQIRLLNSKANTTSDRQGVCRCLTSLAAQFQ----RRHR----LNFNLVKQLPGKCNVNIRYNITTQNPNCSQVK
2LVF Chain:A ((16-101))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS----------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40437 for 347 contacts (-116.5/contact) +
2D Compatibility (PS) -6444 + (NN) -1162 + (LL) 1356
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -50587.0 ( -145.78 by residue)
QMean score : 0.269
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: