Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YGPCGKHNIEKEAEKLAPCTKAAQDLKAPVSKSCCTVMEKKLKNPGCLCAIMLSHTAKNAGVKPEVAVTIPKRCNIPVRPVGHKCGAFPLV
1N89 Chain:A ((5-65))
-------------SQLAVCASAILSG-AKPSGECCGNLRAQ--Q-GCFCQYAKDPTYGQ-YIRSPHARDTLTSCGLAVP------------
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19319 for 385 contacts (-50.2/contact) +
2D Compatibility (PS) -6128 + (NN) -1854 + (LL) 996
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -29055.0 ( -75.47 by residue)
QMean score : 0.309
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: