Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGECGRTPIRSAAASLSPCLGAAGNAK------A---KVPPACCSKVAALLKTTPKCLCAILLS---PLAKQ------------AG----I-K-PGIAIGIPKRCNIRNRQAGKKCGN
1B1U Chain:A ((16-110))
--------------PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI---PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIHG------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37688 for 396 contacts (-95.2/contact) +
2D Compatibility (PS) -6467 + (NN) -331 + (LL) 732
1D Compatibility (HY) -3600 + (ID) 500
Total energy: -47854.0 ( -120.84 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: