Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DCKTSIPSLISQCSKYVQVS---GPEI----P------PSQGCCDVMKDLDIPCLCNLVTPEVEKLV--------SMEK----VVFVARTCGLTLEPGMKCGSFTVPPA
1SM7 Chain:A ((15-102))
---------LRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQVCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQIG------------
General information:
TITO was launched using:
RESULT:
Template:
1SM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44134 for 410 contacts (-107.6/contact) +
2D Compatibility (PS) -5995 + (NN) 2851 + (LL) 476
1D Compatibility (HY) -800 + (ID) 400
Total energy: -48002.0 ( -117.08 by residue)
QMean score : 0.224
(partial model without unconserved sides chains):
PDB file :
Tito_1SM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SM7-query.scw
PDB file :
Tito_Scwrl_1SM7.pdb
: