Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AGCDILKLTPCVAASRNAK------V---MPSRQCCSNIAGMGKGLPGAKCLCSLLSHP---LARS------------QG----V--APRIALGIPQKCRIAVPRGFVCQGIRVPGS
1B1U Chain:A ((16-110))
------PLDSCRWYVSTRTCGVGPRLATQEMKARCCRQLEAI-----PAYCRCEAVRILMDGVVTPSGQHEGRLLQDLPGCPRQVQRAFAPKLVTEVECNLATIHG-----------
General information:
TITO was launched using:
RESULT:
Template:
1B1U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37759 for 408 contacts (-92.5/contact) +
2D Compatibility (PS) -6495 + (NN) -381 + (LL) 572
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -47963.0 ( -117.56 by residue)
QMean score : 0.343
(partial model without unconserved sides chains):
PDB file :
Tito_1B1U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B1U-query.scw
PDB file :
Tito_Scwrl_1B1U.pdb
: