Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------EGCDNDRQDMIRECAKYQKFPKEPKKDPSKACCAVWQKADFPCLCKDVTKELEKVAYVAKFCKWPFPSGYKCGSYTFPLGQ----------
1JMX Chain:A ((282-363))
GKARLLAVQPAFIKAGGESEIT-LVG-----SGLAGKPDLGAGVEVTEVLEQTP------------TLVRLKAR-----AAADAKPGQREVAVGTLKGVNLAVYD
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11564 for 342 contacts (33.8/contact) +
2D Compatibility (PS) -6131 + (NN) -4603 + (LL) 1508
1D Compatibility (HY) -1200 + (ID) 400
Total energy: 738.0 ( 2.16 by residue)
QMean score : 0.128
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: