Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------ACDATNNMGKLL--PCRQAAVKNGKDPKQLAGCCDAVKP--FSGSKDAADCLCQ-----SLLAAQKVDKTVDLHSAIAIPAKCGIP----------VQA-NLKCNG--MAVPQH
1GD0 Chain:A ((1-118))
PMFIVNTNVPRASVPD--GFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPC-ALCSLHSIGKIGGAQNRSYSKLLCGLLA--ERLRISPDRVYINYYDMNAANVGWNNSTFALEHH
General information:
TITO was launched using:
RESULT:
Template:
1GD0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3062 for 415 contacts (-7.4/contact) +
2D Compatibility (PS) -9340 + (NN) -3099 + (LL) 24
1D Compatibility (HY) -3200 + (ID) 1100
Total energy: -19777.0 ( -47.66 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_1GD0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GD0-query.scw
PDB file :
Tito_Scwrl_1GD0.pdb
: