Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATCSNNYSALLPCAAATR----SATA---------TPSAACCKVVEGFKSNPACLCSTIAAARAA------GYS-----INEHNAESIPTRCKLHGYTPCSKKN
2LVF Chain:A ((16-101))
-------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22125 for 345 contacts (-64.1/contact) +
2D Compatibility (PS) -6643 + (NN) -487 + (LL) 100
1D Compatibility (HY) -2800 + (ID) 850
Total energy: -32805.0 ( -95.09 by residue)
QMean score : 0.360
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: