Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DPDPKCKNVAESIIPCVEYIMTP---D--ASNP-----------PAPCCNGMTSLAGQVQALPERQFACRCIKDGIFDLP----DLN-----LAALAALPNNCGVDLR--FQITPDMDCDNLN
1W2Q Chain:A ((22-121))
---------RVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMEN------TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38972 for 428 contacts (-91.1/contact) +
2D Compatibility (PS) -7319 + (NN) -1003 + (LL) 528
1D Compatibility (HY) -3600 + (ID) 600
Total energy: -50966.0 ( -119.08 by residue)
QMean score : 0.132
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: