Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITCPDTDITLTACLSYVAYPNPPPPQPCCDAVLDVTAQARTREDRQAVCSCLKGLMIGI----PGLD-----LTALAALPKVCGANIGYEISPGMDCSKIN
3OB4 Chain:A ((428-485))
-------------------------QERCCNELNEFE------NNQRCMCEALQQIMENQSDRLQGRQQEQQFKRELRNLPQQCGLRAP-------------
General information:
TITO was launched using:
RESULT:
Template:
3OB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29567 for 261 contacts (-113.3/contact) +
2D Compatibility (PS) -5166 + (NN) -2424 + (LL) 2044
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -37263.0 ( -142.77 by residue)
QMean score : 0.221
(partial model without unconserved sides chains):
PDB file :
Tito_3OB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OB4-query.scw
PDB file :
Tito_Scwrl_3OB4.pdb
: