Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITCRDAAITLMGCLPYVAHP---T--PS-P-----------PQNCCAAVLDVTGQAITREDRQAVCSCLKGLMNGI----PGLDL-----TALASLPKVCGANIG--YEISPDMDCSKIN
1W2Q Chain:A ((23-121))
--------VNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEME----N--TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV--------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59848 for 414 contacts (-144.6/contact) +
2D Compatibility (PS) -7272 + (NN) -3082 + (LL) 1588
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -73264.0 ( -176.97 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: