Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MGAACRGYCRKIYLAIDNVLYAINETMVMWKKELKSLVKGNPTIFNDKLAISTLDDCLYMLDMRMIVQSG--PIISPVIMIVTK-----------------
2JPF Chain:A ((1-106))
KQQLQEHAPSHANLDVKWLDGLRAGSMALQGDVKVWMQNLEDLHTRRPDEFTARLQQST-DALYSHLEAQWAKQHGTPPTASDVVGMPQWQEYTAMLRERFAGLDTI
General information:
TITO was launched using:
RESULT:
Template:
2JPF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -25547 for 506 contacts (-50.5/contact) +
2D Compatibility (PS) -7866 + (NN) 1381 + (LL) 176
1D Compatibility (HY) -400 + (ID) 850
Total energy: -33106.0 ( -65.43 by residue)
QMean score : 0.212
(partial model without unconserved sides chains):
PDB file :
Tito_2JPF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JPF-query.scw
PDB file :
Tito_Scwrl_2JPF.pdb
: