Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKYDETKVKPAISTSQEPKRINGSKFQSVLSKRRYDINFDDKKYAVKTVKTRFLETEQQSSKLRDLLESIPVIGRFLAKIFTSEKETYKKLQLQIDRSSKIRNESRIDDKYTEEISSKLKKSNIEQVDDKKSRSP |
| 4CJD Chain:A ((6-189)) | -PPSTDEIAKAALVGVYNNTQDINGFK--------VGDTIYDIENGQPKGRPATEDDVKADDFGGLGLKEVLAQHDQSLADLTGTVEENSEALVKTAEVVNDISADVKANTAAIREN-----KAATANGLETRLADA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CJD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 40203 for 595 contacts (67.6/contact) +
2D Compatibility (PS) -12989 + (NN) 1287 + (LL) 1184
1D Compatibility (HY) 5600 + (ID) 900
Total energy: 34385.0 ( 57.79 by residue)
QMean score : 0.115
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