Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIDFNIINNMININTKRQITGFFVYIIGFSGSGKLSTAIELSNMIDALIVNSNFSNNTQVCSIYDNVFEHNHIPEEVQDRIYNIAQIMLQAIEAYLIHSKNYIFIDELMKNNDHNTKMYNSVVELSKRMNTQILPIVLRCDLLTLQKRIKLKRQRENKKATNISSIIENFRTH--DSFIPPNAIEIENSNMSIKEVAEKITSQMHKLSQINSIYTKG
1KNQ Chain:A ((5-173))
------------------NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLND--DDRKPWLQALNDAA----FAMQRTNKVSLIVCSAL--KK----HYRD---LLREGNPNLSFIYLKGDFDVIESRLKARKGHFFK-TQM---LVTQFETLQEPGADETDVLVVDIDQ-PLEGVVASTIEVIKK-----------
General information:
TITO was launched using:
RESULT:
Template:
1KNQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68724 for 1286 contacts (-53.4/contact) +
2D Compatibility (PS) -18104 + (NN) -5827 + (LL) 3512
1D Compatibility (HY) -4000 + (ID) 1300
Total energy: -94443.0 ( -73.44 by residue)
QMean score : 0.355
(partial model without unconserved sides chains):
PDB file :
Tito_1KNQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KNQ-query.scw
PDB file :
Tito_Scwrl_1KNQ.pdb
: