Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLLASLPEGHTIIGLQFENLMLNNRKSIPNILGIDEIISENLFFQRKTGNSAIYQIDYIIRTKFNTLYICEIKFSKNRIGHSIM
1GEF Chain:A ((4-52))
-------------KGAQAERELIKLLEK----HGFA-VVRSA---G-------SKKVDLVAGNG-KKYLCIEVKVTKKDHLYVGK
General information:
TITO was launched using:
RESULT:
Template:
1GEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17136 for 263 contacts (-65.2/contact) +
2D Compatibility (PS) -5448 + (NN) -1837 + (LL) 1716
1D Compatibility (HY) -2400 + (ID) 400
Total energy: -25505.0 ( -96.98 by residue)
QMean score : 0.149
(partial model without unconserved sides chains):
PDB file :
Tito_1GEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GEF-query.scw
PDB file :
Tito_Scwrl_1GEF.pdb
: