Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVTLNTPKVDFNFTAKNFNLLGVD-NKYYTLSDCCGKNGFIVMFI-CNHCPYVQSIISNLISDVDLLKKDYQVNTIAIMPNDVNEYPEDSFENMINFAKE-------NKFTFPYLIDSKQEVAKEYGAVC------------TPDFFGFNANLNLCYRGRFNDAKKEKIQNYEIGSSNLFQAMKFIAETGNSPINQKSSIGCSIKWSNSTG
1XCC Chain:A ((2-181))
-------GYHLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK-LNCKLIGFSCNS--------KESHDKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTG-------RNAHEILRVLKSLQLTYTTP------VATPVNWNEGDK
General information:
TITO was launched using:
RESULT:
Template:
1XCC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134722 for 1132 contacts (-119.0/contact) +
2D Compatibility (PS) -17605 + (NN) -6950 + (LL) 1412
1D Compatibility (HY) -6000 + (ID) 1100
Total energy: -164965.0 ( -145.73 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_1XCC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XCC-query.scw
PDB file :
Tito_Scwrl_1XCC.pdb
: