Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVMNTYAKSGVDLKLYNKLMKEVKLVVDENKREEVISEVGSFSALF-DFAALSKKYDHPVLVSSTDGVGTKLLIAQEV-------DKHDTIGIDLVAMCVNDLLAQGATPLFFLDY-FATGA--LNKDVLLSVVQGITEG---CKQAKITL--VGGETAEMPGMYGNNHYDLAGFVVGVVDKSKILPNYGVMRAGDYIVGLESSG-----------IHSNGFSLVRHIFEDL------GISY----------------NDLSPWDNQLWGEVLLKPTKIYVDSLLPI--M--SQVKGIAHITGGGLIDNVPRILPKNLFADVDISSLEWPDIFLWLTKEGKVEKREMLRTFNCGIGMILIIDPENMQGVKNHFQKLGEKIEIIGKLNEKYNPSFNGVVS |
| 3KIZ Chain:A ((28-377)) | --------------------------DKGI-YPRA------FCKIIPDILG---GDPEYCNIMHADGAGTKSSLAYVYWKETGDISVWKGIAQDAVIMNIDDLICVGAVDNILLSSTIGRNKNLIPGEVLAAIINGTEEVLQMLRDNGIGIYSTGGETADVGDLVR--TIIVDSTVTCRMKRQDVISN-ENIKAGNVIVGFASYGQTSYETEYNGGMGSNGLTSARHDVFNNVLASKYPESFDPKVPENLVYSGEMNLTDPYLNVPLDAGKLVLSPTRTYAPLMKEIIHQYKGKLDGVVHCSGGGQTKVLH-FT-DATTHIIKDNLFDVPPLFQLIQGQSNTPWEEMYKVFNMGHRLEIYTDAAHAEGMIAIAKKFNIEAKIIGRVEAPVAGKRLTITG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KIZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190242 for 2492 contacts (-76.3/contact) +
2D Compatibility (PS) -31339 + (NN) -8949 + (LL) 2904
1D Compatibility (HY) -11600 + (ID) 3350
Total energy: -242576.0 ( -97.34 by residue)
QMean score : 0.447
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